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Dubcovsky J. and J. Dvorak (2007) Genome plasticity a key factor in the success of polyploid wheat under domestication, Science 316:1862-1866

Gaut B.S. Wright S.L., Rizzon, C. Anderson L.K., and J. Dvorak (2007) Recombination: An underappreciated factor in the evolution of plant genomes. Nature Rev. Genet. 8:77-84

Akhunov E.D., Akhunova, A.R. and J. Dvorak (2007) Mechanisms and rates of birth and death of dispersed duplicated genes during the evolution of a multigene family in diploid einkorn wheat. Mol. Biol. Evol. 24:539-550

Luo M.C., Young, Z.L., Kawahara, T., You, F., J. Dvorak (2007) The structure of wild and domesticated emmer wheat populations, gene flow between them, and the site of emmer domestication, Theor. Appl. Genet. 114:947-959

Nelson W.M., Dvorak J., Luo M.C., Messing J., Wing R.A., and C. Soderlund (2007) Efficacy of clone fingerprinting methodologies. Genomics, 89:160-165   

You F.M., Luo M.C.,  Gu, Y.Q., Lazo G.R., Dvorak, J., and O.D. Anderson (2007) GenoProfiler: Batch Processing of High Throughput Capillary Fingerprinting Data. Bioinformatics, 23:240-242.

Dvorak J., Deal, K.R., and M.C.Luo (2006) Discovery and mapping of wheat Ph1 suppressors. Genetics 174: 17-27

Dvorak, J., Akhunov, E.D., Akhunov, A.R., Deal, K.R., and M.C. Luo (2006) Molecular characterization of a diagnostic DNA marker for domesticated tetraploid wheat provides evidence for gene flow from wild tetraploid wheat to hexaploid wheat. Mol. Biol. Evol. 23:1386-1396

Akhunov, E.D., Akhunova, A.R., and J. Dvorak (2005) BAC libraries of Triticum urartu, Aegilops  speltoides and Ae. tauschii, the diploid ancestors of polyploid wheat. Theor. Appl. Genet. 111: 1617-1622

Luo M.C., Deal K.R., Young Z.L., and , J. Dvorak (2005) Comparative genetic maps reveal extreme crossover localization in the Aegilops speltoides chromosomes. Theor. Appl. Genet. 111:1098-1106

Dvorak J. and E.D. Akhunov (2005) Tempos of deletions and duplications of gene loci in relation to recombination rate during diploid and polyploid evolution in the Aegilops-Triticum alliance. Genetics 171: 323-332

Caldwell, K. S., J. Dvorak, E. S. Lagudah, E. Akhunov, M. C. Luo, P. Wolters, and W. Powell (2004) Sequence polymorphism in polyploid wheat and their D-genome diploid ancestor. Genetics 167: 941-947.

Dvorak J. (2004) Polyploidy. Encyclopedia of Plant and Crop Science, pp. 1038-1041 

Blake, N.K., Sherman, J.D., Dvorak J., and L.E. Talbert (2004) Genome-specific primer sets for starch biosynthesis genes in wheat. Theor Appl Genet 109: 1295-1302

Hossain K.G., Kalavacharla V., Lazo G.R., Hegstad J., Wentz M.J., S. Kianian, Simons, K. Gehlhar S., Rust J.L., Syamala R.R., Obeori K., Bhamidimarri S., Karunadharma P., Chao S., Anderson O.D., Qi L.L., Echalier B., Gill B.S., Linkiewicz A.M., Ratnasiri A., Dubcovsky J., Akhunov E.D., Dvorák J., Miftahudin, Ross K., Gustafson J.P., Radhawa H.S., Dilbirligi M., Gill K.S., Peng J.H., Lapitan N.L.V., Greene R.A., Bermudez-Kandianis C.E., Sorrells M.E., Feril O., Pathan M.S., Nguyen H.T., Gonzalez-Hernandez J.L., Conley E.J., Anderson J.A., Choi D.W., Fenton D., Close T.J., McGuire P.E., Qualset C.O., and S.F. Kianian (2004) A chromosome bin map of 2148 expressed sequence tag loci of wheat homoeologous group 7. Genetics 168: 687-699

Randhawa H.S., Dilbirligi M., Sidhu D., Erayman M., Sandhu D., Bondareva S., Chao S., Lazo G.R., Anderson O.D., Miftahudin, Gustafson J.P., Echalier B., Qi L.L., Gill B.S., Akhunov E.D., Dvorák J., Linkiewicz A.M., Ratnasiri A., Dubcovsky J., Bermudez-Kandianis C.E., Greene R.A., Sorrells M.E., Conley E.J., Anderson J.A., Peng J.H., Lapitan N.L.V., Hossain K.G., Kalavacharla V., Kianian S.F., Pathan M.S., Nguyen H.T., Endo T.R., Close T.J., McGuire P.E., Qualset C.O., and K.S. Gill (2004) Deletion mapping of homoeologous group 6-specific wheat expressed sequence tags. Genetics 168: 677-686

Linkiewicz A.M., Qi L.L., Gill B.S., Ratnasiri A., Echalier B., Chao S., Lazo G.R., Hummel D.D., Anderson O.D., Akhunov E.D., Dvorák J., Pathan M.S., Nguyen H.T., Peng J.H., Lapitan N.L.V., Miftahudin, Gustafson J.P., La Rota C.M., Sorrells M.E., Hossain K.G., Kalavacharla V., Kianian S.F., Sandhu D., Bondareva S.N., Gill K.S., Conley E.J., Anderson J.A., Fenton R.D., Close T.J., McGuire P.E., Qualset C.O., and J. Dubcovsky (2004)  A 2500-locus bin map of wheat homoeologous group 5 provides insights on gene distribution and colinearity with rice. Genetics 168: 665-676

Miftahudin, Ross K., Ma X.-F., Mahmoud A.A., Layton J., Rodriguez Milla M.A., Chikmawati T., Ramalingam J., Feril O., Pathan M.S., Surlan Momirovic G., Kim S., Chema K., Fang P., Haule L., Struxness H., Birkes J., Yaghoubian C., Skinner R., McAllister J., Nguyen V., Qi L.L., Echalier B., Gill B.S., Linkiewicz A.M., Dubcovsky J., Akhunov E.D., Dvorák J., Dilbirligi M., Gill K.S., Peng J.H., Lapitan N.L.V., Bermudez-Kandianis C.E., Sorrells M.E., Hossain K.G., Kalavacharla V., Kianian S.F., Lazo G.R., Chao S., Anderson O.D., Gonzalez-Hernandez J., Conley E.J., Anderson J.A., Choi D.-W., Fenton R.D., Close T.J., McGuire P.E., Qualset C.O., Nguyen H.T., and J.P. Gustafson (2004)  Analysis of expressed sequence tag loci on wheat chromosome group 4. Genetics 168: 651-663

Qi LL, Echalier B, Chao S, Lazo GR, Butler GE, Anderson OD, Akhunov ED, Dvorák J, Linkiewicz AM, Ratnasiri A, Dubcovsky J, Bermudez-Kandianis CE, Greene RA, Kantety R, La Rota CM, Munkvold JD, Sorrells SF, Sorrells ME, Dilbirligi M, Sidhu D, Erayman M, Randhawa HS, Sandhu D, Bondareva SN, Gill KS, Mahmoud AA, Ma X-F, Miftahudin, Gustafson JP, Conley EJ, Nduati V, Gonzalez-Hernandez JL, Anderson JA, Peng JH, Lapitan NLV, Hossain KG, Kalavacharla V, Kianian SF, Pathan MS, Zhang DS, Nguyen HT, Choi D-W, Fenton RD, Close TJ, McGuire PE, Qualset CO, and B.S Gill (2004) A chromosome bin map of 16,000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat. Genetics 168: 701-712

Peng JH, Zadeh H, Lazo GR, Gustafson JP, Chao S, Anderson OD, Qi LL, Echalier B, Gill BS, Dilbirligi M, Sandhu D, Gill KS, Greene RA, Sorrells ME, Akhunov ED, Dvorák J, Linkiewicz AM, Dubcovsky J, Hossain KG, Kalavacharla V, Kianian SF, Mahmoud AA, Miftahudin, Conley EJ, Anderson JA, Pathan MS, Nguyen HT, McGuire PE, Qualset CO,  and NLV Lapitan (2004) Chromosome bin map of expressed sequence tags in homoeologous group 1 of hexaploid wheat and homoeology with rice and Arabidopsis. Genetics 168: 609-623

Zhang D, Choi DW, Wanamaker S, Fenton RD, Chin A, Malatrasi M, Turuspekov Y, Walia H, Akhunov ED, Kianian P, Otto C, Simons K, Deal KR, Echenique V, Stamova B, Ross K, Butler GE, Strader L, Verhey SD, Johnson R, Altenbach S, Kothari K, Tanaka C, Shah MM, Laudencia-Chingcuanco D, Han P, Miller RE, Crossman CC, Chao S, Lazo GR, Klueva N, Gustafson JP, Kianian SF, Dubcovsky J, Walker-Simmons MK, Gill KS, Dvorák J, Anderson OD, Sorrells ME, McGuire PE, Qualset CO, Nguyen HT, and TJ Close (2004) Construction and evaluation of cDNA libraries for large-scale expressed sequence tag sequencing in wheat (Triticum aestivum L.). Genetics 168: 595-608

Conley EJ, Nduati V, Gonzalez-Hernandez JL, Mesfin A, Trudeau-Spanjers M, Chao S, Lazo GR, Hummel DD, Anderson OD, Qi LL, Gill BS, Echalier B, Linkiewicz AM, Dubcovsky J, Akhunov ED, Dvorák J, Peng JH, Lapitan NLV, Pathan MS, Nguyen HT, Ma X-F, Miftahudin, Gustafson JP, Greene RA, Sorrells ME, Hossain KG, Kalavacharla V, Kianian SF, Sidhu D, Dilbirligi M, Gill KS, Choi DW, Fenton RD, Close TJ, McGuire PE, Qualset CO, JA Anderson (2004) A 2600-locus chromosome bin map of wheat homoeologous group 2 reveals interstitial gene-rich islands and colinearity with rice. Genetics 168: 625-637

Munkvold JD, Greene RA, Bermudez-Kandianis CE, La Rota CM, Edwards H, Sorrells SF, Dake T, Benscher D, Kantety R, Linkiewicz AM, Dubcovsky J, Akhunov ED, Dvorák J, Miftahudin, Gustafson JP, Pathan MS, Nguyen HT, Matthews DE, Chao S, Lazo GR, Hummel DD, Anderson OD, Anderson JA, Gonzalez-Hernandez JL, Peng JH, Lapitan N, Qi LL, Echalier B, Gill BS, Hossain KG, Kalavacharla V, Kianian SF, Sandhu D, Erayman M, Gill KS, McGuire PE, Qualset CO, ME Sorrells (2004) Group 3 chromosome bin maps of wheat and their relationship to rice chromosome 1. Genetics 168: 639-650

Gill BS, Appels R, Botha_Oberholster A.-M., Buell R.C., Bennetzen J.L., Chumley F., Dvorak J., Iwanaga M., Keller B., Li W.-L., McCombie R., Ogihara Y., Quetier F., and T. Sasaki (2004) A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium. Genetics 168: 1087-1096

Dvorak J, Yang Z-L, You FM, and M.C. Luo (2004) Deletion polymorphism in wheat chromosome regions with contrasting recombination rates. Genetics 168: 1665-1675

Lazo G.R., Chao S., Hummel D.D., Edwards H., Crossman C.C., Lui N., Matthews D.E., Carollo V.L., Hane D.L., You F.M., Butler G.E., Miller R.E., Close T.J., Peng J.H., Lapitan N.L.V., Gustafson J.P., Qi L.L., Echalier B., Gill B.S., Dilbirligi M., Randhawa H.S., Gill K.S., Greene R.A., Sorrells M.E., Akhunov E.D., Dvorák J., Linkiewicz A.M., Dubcovsky J., Hossain K.G., Kalavacharla V., Kianian S.F., Mahmoud A.A., Miftahudin, Ma X.-F., Conley E.J., Anderson J.A., Pathan M.S., Nguyen H.T., McGuire P.E., Qualset C.O., and J.A. Anderson (2004) Development of an expressed sequence tag (EST) resource for wheat (Triticum aestivum L.): EST generation, unigene analysis, probe selection and bioinformatics for a 16,000-Locus bin-delineated map. Genetics 168: 585-593

Luo, M.C., C. Thomas, K.R. Deal, F.M. You, O. D. Anderson, Y.Q. Gu, W. Li, V. Kuraparthy, B.S. Gill, P. E. McGuire, and  J. Dvorak (2003) Construction of contigs of Ae. tauschii genomic DNA fragments cloned in BAC and BiBAC vectors. Proc. 10th Internatl. Wheat Genet. Symp., September 1-6, 2003, Paestum, Italy, pp. 293-296.

Akhunov, A.D., J.L. David, S. Chao, G. Lazo, O. D. Anderson, L.L. Qi, B. Echalier, B. S. Gill, A. M. Linkiewicz, J. Dubcovsky, Miftahudin, J. P. Gustafson,  M. La Rota,  M. E. Sorrells, D. Zhang, H. T. Nguyen, K. Hossain, S.F. Kianian, J.H. Peng,  N. L.V. Lapitan,  D. Sidhu, K. S. Gill, P. E. McGuire, C. O. Qualset, and  J. Dvorak (2003) GC composition and codon usage in genes of inbreeding and outcrossing Triticeae species. Proc. 10th Internatl. Wheat Genet. Symp., September 1-6, 2003, Paestum, Italy, pp. 203-206.

Gill, B.S. L. Qi,, B. Echalier, S. Chao, G. Lazo, S. Chao, O. D. Anderson, E. D. Akhunov,  J. Dvorak, A. M. Linkiewicz, J. Dubcovsky, C.E. Bermudez-Kandianis, R.A. Green, M. La Rota,  M. E. Sorrells, M. Dilbirligi, D. Sidhu, M. Eryman, K. S. Gill, Miftahudin, X. Ma, A. Mahmoud, J. P. Gustafson, E.J. Wennerlind, V. Nduati, J.L. Gonzalez-Hernandez, J. A. Anderson, J. Peng,  N. L.V. Lapitan, K. Hossain, V. Kalavacharla, S. F. Kianian, M.S. Pathan, H. T. Nguyen,  D.W. Choi, T.J. Close, P. E. McGuire, C. O. Qualset. (2003) A transcriptome map of wheat.  Proc. 10th Internatl. Wheat Genet. Symp., September 1-6, 2003, Paestum, Italy, pp. 261-264.

 Dvorak, J., A.D. Akhunov, A. R. Akhunov, M.-C. Luo, A. M. Linkiewicz, J. Dubcovsky, D. Hummel, G. Lazo, S. Chao, O. D. Anderson, J. David , L-L. Qi, B. Echalier,  B. S. Gill,  Miftahudin, J. P. Gustafson,  M. La Rota,  M. E. Sorrells, D. Zhang, H. T. Nguyen, V. Kalavacharla,  K. Hossain, S. F. Kianian, J.H. Peng,  N. L.V. Lapitan,  E. J. Wennerlind,  V. Nduati, J. A. Anderson,  D. Sidhu, K. S. Gill, D.-W. Choi, T. J. Close, P. E. McGuire, and C. O. Qualset (2003) New Insights into the organization and evolution of wheat genomes. Proc. 10th Internatl. Wheat Genet. Symp., September 1-6, 2003, Paestum, Italy, pp. 248-253.

 Sorrells, M.E., La Rota, C.M. Bermudez-Kandianis, C.E., Greene, R.A., Kantety, R., Munkvold, J.D., Miftahudin, Mahmoud, A. Gustafson, J.P., Qi, L.L., Echalier, B., Gill, B.S., Matthews, D., Lazo G.  Chao, S., Anderson, O.D., Edwards, H., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Zhang,  D., Nguyen, H.T., Peng, J. Lapitan, N.L.V., Gonzalez-Hernandez, J.L., Anderson, J.A., Hossain, K.G., Kalavacharla, V., Kianian, S.F., Choi, D.W., Close, T.J., Dilbirligi, M., Gill, K.S., Steber, C., Walker-Simmons, M.K., McGuire, P.E. C.O. Qualset (2003)  Comparative DNA sequence analysis of wheat and rice genomes.  Genome Res., 13:1818-1827.  

E. D. Akhunov, A. R. Akhunov, A. M. Linkiewicz, J. Dubcovsky, D. Hummel, G. Lazo, S. Chao, O. D. Anderson, J. David , L-L. Qi, B. Echalier,  B. S. Gill,   Miftahudin, J. P. Gustafson,  M. La Rota,  M. E. Sorrells, D. Zhang, H. T. Nguyen, V. Kalavacharla,  K. Hossain, S. F. Kianian, J. Peng,  N. L.V. Lapitan,  E. J. Wennerlind,  V. Nduati, J. A. Anderson,  D. Sidhu, K. S. Gill, P. E. McGuire, C. O. Qualset, and  J. Dvorak (2003) Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates. Proc. Natl. Acad. Sci. USA. 100: 10836-10841.

Luo, M.C., C. Thomas, F. M. You, J. Hsiao, S. Ouyang, C. R. Buell, M. Malandro, P. E. McGuire, O. D. Anderson, and  J. Dvorak (2003) High-throughput fingerprinting of bacterial artificial chromosomes using the SNaPshotTM  labeling kit and sizing of restriction fragments by capillary electrophoresis. Genomics 82:378-389.

Akhunov, E. D., J.A. Goodyear,  S. Geng,  L.L. Qi,  B. Echalier, B.S. Gill, B. S.   Miftahudin, J.P. Gustafson, G. Lazo, S. Chao, O.D. Anderson, A.M. Linkiewicz, J. Dubcovsky, M. La Rota, M. E. Sorrells, D. Zhang, D.  H.T. Nguyen, V. Kalavacharla, K. Hossain, S.F.  Kianian, J. Peng, N. L.V. Lapitan, J.L.Gonzalez-Hernandez, J. A. Anderson, D.W. Choi,  T.J. Close, M. Dilbirligi, K.S. Gill,  M.K. Walker-Simmons, C. Steber, P.E. McGuire, C.O. Qualset, and  J. Dvorak (2003) The organization and rate of evolution of the wheat genomes are correlated with recombination rates along chromosome arms. Genome Res. 13:1-11.

Gao, M.-J.,  J. Dvorak, and R.L. Travis (2001) Expression of the extrinsic 23-kDa protein of photosystem II is response to salt stress in associated with the K+/Na+ discrimination locus Kna1 in wheat. Plant Cell Rep. 20:774-778

Dvorak, J. (2001) Triticum species (wheat). Encyclopedia of Genetics. pp. 2060-2068.

Dvorak, J. and A.J. Lukaszewski (2000)  Centromere association and its timing are unlikely mechanisms by which the wheat Ph1 locus regulates pairing of homoeologous chromosomes.  Chromosoma 109:410-414.

Dvorak, J. and M.C. Luo (2000) Evolution of free-threshing and hulled forms of Triticum aestivum: Old problems and new tools. in The Percival Symposium. Wheat - Yesterday, Today and Tomorrow. 12-13 July, 1999. pp. 127-136.

Luo, M.C., Z.-L. Yang, and  J. Dvorak (2000) The Q locus of Iranian and European spelt wheat. Theor. Appl. Genet. 100: 602-606.

Luo, M.-C., Z.-L. Yang, R.S. Kota, and  J. Dvorak (1999) Recombination of chromosomes 3Am and 5Am of Triticum monococcum with homeologous chromosomes 3A and 5A of wheat: The distribution of recombination across chromosomes. Genetics 154: 1301-1308. 

Dubcovsky, J., G. Tranquilli, I. A. Khan, L. A. Pflüger, E. Suárez, M. Rousset, and  J. Dvorak (1999)  Comparisons of recombination percentages in crosses involving telocentric and complete wheat chromosomes.  Theor. Appl. Genet., 100:308-314. 

Deal, K. R., S. Goyal, and  J. Dvorak (1999) Arm location of Lophopyrum elongatum genes affecting K+/Na+ selectivity under salt stress. Euphytica, 108:193-198.

Dvorak, J., M.-C. Luo, Z.-L. Yang (1998) Genetic evidence on the origin of T. aestivum L. in The Origins of Agriculture and the Domestication of Crop Plants in the Near East. A. Damania (Ed), ICARDA, Aleppo, Syria, pp. 235-251.

Luo, M.-C., Z.-L. Yang, R. S. Kota, and  J. Dvorak (1998) Recombination patterns across homoeologous chromosomes in wheat. In: Slinkard, A. E. (Ed) 8th International Wheat Genetics Symposium, Saskatoon, Saskatchewan, Canada, August 2 to 8, 1998, pp. 82-85.

Gao, M.-J. , R. L. Travis,  J. Dvorak (1998) Mapping of protein polymorphisms associated with the expression of wheat Kna1 locus under NaCl stress. In: Slinkard, A. E. (Ed) 8th International Wheat Genetics Symposium, Saskatoon, Saskatchewan, Canada, August 2 to 8, 1998, pp. 8-11.

Dvorak. J. (1998) Genome analysis of the polyploid species in the Triticum-Aegilops  alliance.  In: Slinkard, A. E. (Ed) 8th International Wheat Genetics Symposium, Saskatoon, Saskatchewan, Canada, August 2 to 8, 1998, pp. 8-11.

Dvorak, J., M.-C. Luo, Z.-L. Yang and H.-B. Zhang (1998) The structure of Aegilops tauschii genepool and the evolution of hexaploid wheat. Theor. Appl.  Genet. 97:657-670.

Luo, M.-C. Z.-L. Yang, and  J. Dvorak (1998)  Position effects of ribosomal RNA multigene loci on meiotic recombination in wheat. Genetics 1105-1113.

Dvorak, J., M.-C. Luo, and Z.-L. Yang (1998) Restriction fragment length polymorphism and divergence in the genomic regions of high and low recombination in self-fertilizing and cross-fertilizing Aegilops species.  Genetics 148: 423-434.

Cassidy B. G., Dvorak, J.,  O. D. Anderson (1998)  The wheat low-molecular-weight glutenin genes: characterization of six new genes and progress in understanding gene family structure. Theor. Appl. Genet. 96:743-750.

Dubcovsky, J., M. Echeide, F. Giancola, M. Rousset, M.C. Luo, L.R. Joppa and  J. Dvorak (1998) Seed storage protein loci and RFLP maps of diploid, tetraploid, and hexaploid wheat. Theor. Appl. Genet. 95: 1169-1180.

Gorham, J., J. Bridges, J. Dubcovsky,  J. Dvorak, P. A. Hollington, M. C. Luo, J. A. Khan (1997) Genetic analysis and physiology of a trait for enhanced K+/Na+ discrimination in wheat. New Phytologist. 137: 109-116.

Luo, M.C., J. Dubcovsky, S. Goyal, and  J. Dvorak (1997) Engineering of interstitial foreign chromosome segments containing the K+/Na+ selectivity gene Kna1 by sequential homoeologous recombination in durum wheat. Theor. Appl. Genet., 93:1180-1184.

Resta P., H.-B. Zhang, J. Dubcovsky, and  J. Dvorak (1996) The origin of the genomes of  Triticum biunciale, T. ovatum, T. neglectum, T. columnare and T. rectum based on variation in repeated nucleotide sequences.  Am. J. Bot. 83: 1556-1565.

Luo, M.-C.  and   J. Dvorak (1996)  Molecular mapping of an aluminum tolerance locus on chromosome 4D of Chinese Spring wheat.  Euphytica, 91:31-35.

Dvorak, J. and M.C. Luo (1996) Homoeologous Group 4. in Progress in Genome Mapping of wheat and Realtes Species.  Joined Proc. of the 5th and 6th public Workshops of the International Triticeae Mapping Initiative, Norwich, England and Sydney, Australia. P. E. McGuire and C. O. Qualset (Eds).  Genetic Resources Conservation Program, Division of Agriculture and Natural Resources, University of California, Davis, pp. 51-69. 

Luo, M.C., J. Dubcovsky, and  J. Dvorak (1996) Recognition of homeology by the wheat Ph1 locus. Genetics 143:1195-1203.

Dubcovsky, J., M.C. Luo, G.-Y. Zhong, R. Bransteitter, A. Desai, A.Kilian, A. Kleinhofs, and  J. Dvorak (1996) Genetic map of diploid wheat, Triticum monococcum L., and its comparison with maps of Hordeum vulgare L. Genetics 143: 983-999.

Dvorak, J. and J. Dubcovsky (1995)  Genome analysis of polyploid species employing variation in repeated nucleotide sequences. In Methods of genome analysis in plants. P. P. Jauhar (Ed.). CRC Press. 133-145.

Dvorak, J.  J. Dubcovsky, M.-C. Luo, K. M. Devos., and M. D. Gale (1995)  Differentiation between wheat chromosomes 4B and 4D. Genome 38: 1139-1147.

Dubcovsky, J.  M.-C. Luo, G. E. Santa-Maria, E. Epstein, and  J. Dvorak (1995) Mapping of the K+/Na+ discrimination locus Kna1 in wheat. Theor. Appl. Genet. 92: 448-454.

Dubcovsky, J., M.-C. Luo and   J. Dvorak (1995) Linkage relationships among stress-induced genes in wheat. Theor. Appl. Genet. 91: 795-801.

McGuire, P.E., G.-Y. Zhong, C.O. Qualset, and  J. Dvorak (1995) Resistance to barley yellow dwarf virus disease in derivatives of crosses between hexaploid wheat and species of Lophopyrum (Triticeae; Poaceae).  Plant  Breeding 114:287-290.

Dvorak, J., M.-C. Luo, and J. Dubcovsky (1995) Homoeologous Group 4. in Progress in Genome Mapping of wheat and Related Species.  Proc. 5th Public Workshop of the International Triticeae Mapping Initiative. Genetic Resources Conservation Program, Division of Agriculture and Natural Resources, University of California, Davis, p. 9-11.

Dubcovsky, J. M. C. Luo, G. Y. Zhong, A. Desai, and  J. Dvorak (1995) Comparative RFLP map of Triticum monococcum L. Structural and non structural variation. ITMI Workshop, Nowrich, U.K., p. 57.

Zhong, G.-Y. and  J. Dvorak (1995) Evidence for common genetic mechanisms controlling the tolerance of sudden salt stress in the tribe Triticeae.  Plant Breeding 114: 297-302.

Devos, K. M., Dubcovsky, J., Dvorak, J., Chinoy, C. N., and M.D. Gale (1995) Structural evolution of wheat chromosomes 4A, 5A, and 7B and its impact on recombination. Theor. Appl. Genet. 91:282-288.

Colmer, T. D., E. Epstein, and  J. Dvorak (1995) Differential solute regulation in leaf blades of various ages in salt sensitive  wheat, Triticum aestivum L. and a salt tolerant wheat x Lophopyrum elongatum (Host) A. Love amphiploid. Plant Physiol. 108:1715-1724. 

Dubcovsky, J. and  J. Dvorak (1995) Ribosomal RNA loci: Nomads in the Triticeae genomes. Genetics 140:1367-1377.

Dubcovsky, J. M.-C. Luo, and  J. Dvorak (1995) Differentiation between homoeologous chromosomes 1A of wheat and 1Am of Triticum monococcum and its recognition by the wheat Ph1 locus.   Proc. Natl. Acad. Sci. U.S.A. 92: 6645-6649.

Dubcovsky, J. and  J. Dvorak (1995) Genome identification of Triticum crassum complex with the restriction patterns of repeated nucleotide sequences.  Amer. J. Bot. 82: 131-140.

Van Deynze, A.E., J. Dubcovsky,  K.S. Gill,  J.C. Nelson, M.E. Sorrells,  J. Dvorak, B.S. Gill, E.S. Lagudah, S.R. McCouch, and R. Appels (1995) Molecular-genetic maps for group 1 chromosomes of Triticeae species and their relation to chromosomes in rice and oat.  Genome, 38:45-59.

Zhong, G.-Y. and   J. Dvorak (1995)  Chromosomal control of the tolerance of gradually and suddenly imposed salt stress in Lophopyrum elongatum and wheat, Triticum aestivum L., genomes. Theor. Appl. Genet. 90:229-236.

Zhong, G.-Y, P.E. McGuire, C.O. Qualset, and  J. Dvorak (1994) Cytological and molecular characaterization of a Triticum aestivum L. x Lophopyrum ponticum backcross derivative resistant to barley yellow dwarf.  Genome, 37:876-881.

Dubcovsky, J. and  J. Dvorak (1994)  Genome origin of Triticum cylindricum, Triticum triunciale, and Triticum ventricosum (Poaceae) inferred from variation in restriction patterns of repeated nucleotide sequences.  Amer. J. Bot. 81:1327-1335.

Dvorak, J. and J. Dubcovsky (1994)  Recombination between homoeologous chromosomes in wheat in the absence of the Ph1 locus.  In: Raupp, W. J. and B. S. Gill (eds) Classical and Molecular Cytogenetic Analysis.  Proc. of the US.-Japan Symposium on the Plant Classical and Molecular Cytogenetics, Manhatan, Kansas, pp. 64-75.

Dubcovsky, J., A.F. Galvez, and  J. Dvorak (1994) Comparison of the genetic organization of the early salt stress response gene system in salt-tolerant Lophopyrum elongatum and salt-sensitive wheat.  Theor. Appl. Genet. 87:957-964.

Dvorak, J., M.M. Noaman, S. Goyal, and J. Gorham. (1994) Enhancement of the salt tolerance of Triticum turgidum L. by the Kna1 locus transferred from the Triticum aestivum L. chromosome 4D by homoeologous recombination.  Theor. Appl. Genet. 87:872-877.

Halverson,  J.L. and  J. Dvorak  (1993) Genetic control of sex determination in birds and the potential for its manipulation.  Poultry Sci., 72:890-896.

Galvez, A.F., P. Gulick, and  J. Dvorak (1993) Characterization or the early stages of genetic salt-stress responses in salt-tolerant Lophopyrum elongatum, salt-sensetive wheat, and their amphiploid.  Plant Physiol.  103:257-265.

Dvorak, J., P. Terlizzi, H.-B. Zhang, and P. Resta. (1993) The evolution of polyploid wheats:  Identification of the A genome donor species.  Genome 36:21-31.

Gulick, P.J., and  J. Dvorak (1992) Coordinate gene response to salt stress in Lophopyrum elongatum.  Plant Physiol. 100: 1384-1388.

Zhang, H.-B. and  J. Dvorak (1992) The genome origin and evolution of hexaploid Triticum crassum and Triticum syriacum determined from variation in repeated nucleotide sequences.  Genome 35:806-814.   

Dvorak, J., Halverson, J., Gulick, P., Rauen, K. A., Abbott, U. K., Kelly, B. J. and F.T. Shultz (1992) cDNA cloning of a gene on the Z and W chromosomes sex-linked in gallinaceous birds. J. Hered. 83: 22-25.

Dvorak, J. and J. Dubcovsky (1992) Group 4.  Proc. 3rd International Workshop of Triticeae Mapping Initiative.  El Batan, Mexico. pp. 92-97. 

Dubcovsky, J. and  J. Dvorak (1992) Comparison of Triticum monococcum and T. aestivum chromosome 1A linkage maps based on homologous and homoeologous recombination.  Proc. 3rd International Workshop of Triticeae Mapping Initiative.  El Batan, Mexico.  pp. 15-16.

McGuire, P.E., G. Zhong, C.O. Qualset,  J. Dvorak, and Z. Zhu (1992)  Transfer of a gene for resistance to BYDV from barley to wheat using radiation-induced recombination and RFLP-aided selection.  Proc. 1st International Workshop of Application of DNA Based Markers and Mutations for Improvement of Cereals.  Zaragosa, Spain.  pp. 44-45.

Dvorak, J. and J. Gorham (1992) Methodology of gene transfer by homoeologous recombination into Triticum turgidum: Transfer of K+/Na+ discrimination from T. aestivum. Genome 35: 639-646.

Dvorak, J. and H.B. Zhang (1992) Reconstruction of the phylogeny of the genus Triticum from variation in repeated nucleotide sequences. Theor.  Appl. Genet. 84: 419-429.

Dvorak, J. and H.B. Zhang  (1992) Application of molecular tools for study of the phylogeny of diploid and polyploid species in Triticeae. 1st Int. Symp. on Triticeae, Helsingborg, Hereditas 116: 37-42.

Dvorak, J., E. Epstein, A. Galvez, P. Gulick, and J.A. Omielan (1991) Genetics of salt tolerance in highly salt tolerant Lophopyrum elongatum, salt sensitive wheat, and their amphiploid.  Proc. International Conference on Agricultural Management in Salt-affected Areas.  Agadir, Morocco. pp. 125-136.

Dvorak, J. and H.-B. Zhang (1991)  Do polyploid Triticum species have cytoplasms of their nuclear genome donors.  Proc. Internatl. Symp. on Cytoplasmic Engineering in Wheat. Sapporo, Japan. pp. 40-45.

Sun, M. and  J. Dvorak (1991) Chromosomal location of adenylate kinase 6-phosphogluconate dehydrogenase and glutamate-pyruvate transaminase structural loci in wheat, barley, and Lophopyrum elongatum. Genome 35: 147-154.

Jones, S. S., Dvorak, J. , Knott, D. R. and C.O. Qualset (1991) Use of double-ditelosomic and normal chromosome 1D recombinant substitution lines to map Sr33 on chromosome arm 1DS in wheat. Genome 34: 505-508.

Dvorak, J. and Zhang, H.-B. (1991). Do polyploid Triticum species have cytoplasms of their nuclear genome donors? Nuclear and Organellar Genomes of Wheat Species. T. Sasakuma and T. Kinoshita (Eds). Yokohama, Kihara Memorial Yokohama Foundation for the Advancement of Life Science: 40-47.

Jones, S.S.,  J. Dvorak, D.R. Knott, and C.O. Qualset (1991) Comparison of recombination frequencies among five loci in crosses double-ditelosomic and normal chromosome 1D in wheat.  Proc. 2nd Internatl. Symp. on Chromosome Engineering in Plants.  Columbia, Missouri.  pp. 177-183.

Dvorak, J., Epstein, E., Galvez, A., Gulick, P. and J.A. Omielan  (1991). Genetic basis of plant tolerance of soil toxicity. Plant Breeding in the 1990s. Raleigh: 201-217.

Jones, S. S., Dvorak, J. and C. O. Qualset (1990) Linkage relations of Gli-D1, Rg2, and Lr21 on the short arm of chromosome 1D in wheat. Genome 33: 937-940.

Dvorak, J., Resta, P. and R.S. Kota (1990) Molecular evidence on the origin of wheat chromosomes 4A and 4B. Genome 33: 30-39.

Anderson, O.D., B. Cassidy, J. Steffen,  J. Dvorak, and F.C. Greene (1990) Structure of the high- and low-molecular weight gene families of the homoeologous group 1 chromosomes of the hexaploid bread wheat cultivar Cheyenne.  In:  IV International Workshop on Gluten Proteins.  Manitoba.  pp. 1-8.

Dvorak, J. and H.B. Zhang (1990) Variation in repeated nucleotide sequences sheds light on the phylogeny of the wheat B and G genomes. Proc.  Natl. Acad. Sci. USA 87: 9640-9644.

Gulick, P. J. and  J. Dvorak (1990). Selective enrichment of cDNAs from salt-stressed-induced genes in the wheatgrass, Lophopyrum elongatum, by the formamide-phenol emulsion reassociation technique. Gene 95: 173-177.

Dvorak, J. and D.R. Knott (1990) Location of a Triticum speltoides chromosome segment conferring resistance to leaf rust in Triticum aestivum. Genome 33: 892-897.

Schachtman, D. P., Bloom, A. J. and  J. Dvorak (1989) Salt-tolerant Triticum x Lophopyrum derivatives exclude sodium and chloride ions. Plant Cell and Environment 12: 47-55.

Oard, J. H., Paige, D. and  J. Dvorak (1989) Chimeric gene expression using maize intron in cultured cells of bread wheat. Plant Cell Reports 8: 156-160.

Dvorak, J., Zhang, H. B., Kota, R. S. and M. Lassner (1989) Organization and evolution of the 5S ribosomal RNA gene family in wheat and related species. Genome 32: 1003-1016.

Dvorak, J. (1989) Organization and evolution of multigene families: Inferences from ribosomal RNA gene loci of wheat and related species. Plant Population Genetics, Breeding, and Genetic Resources. A. H. D. Brown, M. T. Clegg, A. L. Kahler and B. S. Weir (Eds). Davis: 83-97. 

Kota, R. S. and  J. Dvorak (1988) Genomic instability in wheat induced by chromosome 6BS of Triticum speltoides. Genetics 120: 1085-1094.

Dvorak, J., Edge, M. and K. Ross (1988) On the evolution of the adaptation of Lophopyrum elongatum to growth in saline environments. Proc. Natl. Acad. Sci. USA 85: 3805-3809.

Dvorak, J., McGuire, P. E. and B. Cassidy (1988) Apparent sources of the A genomes of wheats inferred from the polymorphism in abundance and restriction fragment length of repeated nucleotide sequences. Genome 30: 680-689.

Dvorak, J. (1988) Cytogenetical and molecular inferences about the evolution of wheat. Proc. of the 7th Internatl. Wheat Genet. Symp., Cambridge, pp. 187-192.

Dvorak, J., Jue, D. and M. Lassner (1987) Homogenization of tandemly repeated nucleotide sequences by distance-dependent nucleotide sequence conversion. Genetics 29: 34-40.

Lassner, M., Anderson, O. and  J. Dvorak (1987) Hypervariation associated with a 12-nucleotide direct repeat and inferences on intragenomic homogenization of ribosomal RNA gene spacer based on the DNA sequence of a clone from the wheat Nor-D3 locus. Genome 29: 770-781.

Gulick, P. J. and  J. Dvorak (1987) Gene induction and repression by salt treatment in salt sensitive Chinese Spring and salt tolerant Chinese Spring x Lophopyrum elongatum amphiploid. Proc. Natl. Acad. Sci. USA 84: 99-103.

Dvorak, J. (1987) Chromosomal distribution of genes in Elytrigia elongata which promote or suppress pairing of wheat homoeologous chromosomes. Genome 29: 34-40.

Kota, R. S., McGuire, P. E. and  J. Dvorak (1986) Latent nonstructural differentiation among homologous chromosomes at the diploid level. Genetics 114: 579-592.

Kota, R. S. and  J. Dvorak (1986) Mapping of a chromosome pairing gene and 5SrRNA genes in Triticum aestivum L. by a spontaneous deletion in chromosome arm 5Bp. Can. J. Genet. Cytol. 28: 266-271.

Dvorak, J., Kasarda, D. D., Dietler, M. D., Lew, E. J. L., Anderson, O. D., Litts, J. C. and R.P. Shewry (1986) Chromosomal location of seed storage protein genes in the genome of Elytrigia elongata. Can. J. Genet. Cytol. 28: 818-830.

Lassner, M. and  J. Dvorak (1986) Preferential homogenization between adjacent and alternate subrepeats in wheat rDNA. Nucleic Acid Res. 14: 5499-5512.

Dvorak, J. and R. Appels (1986) Investigation of homologous crossing over and sister chromatid exchange in the wheat Nor-2 locus coding for rRNA and Gli-B2 locus coding for gliadins. Genetics 113: 1037-1056.

Jampates, R. and  J. Dvorak (1986) Location of the Ph1 locus in the metaphase chromosome map and the linkage map of the 5Bq arm of wheat. Can. J. Genet. Cytol. 28: 511-519.

Dvorak, J. and K. Ross (1986) Expression of tolerance of Na+, K+, Mg2+, Cl-, and SO42- ions and seawater in the amphiploid of Triticum aestivum x Elytrigia elongata. Crop Sci. 26: 658-660.

Dvorak, J., Ross, K. and S. Mendlinger (1985) Transfer of salt tolerance from Elytrigia pontica (Podp.) Holub to wheat by the addition of an incomplete Elytrigia genome. Crop Sci. 25: 306-309.

Kota, R. S. and  J. Dvorak (1985) A rapid technique for substituting alien chromosomes into Triticum aestivum and determining their homoeology. Can. J. Genet. Cytol. 27: 549-558.

Limin, A. E., Dvorak, J. and D. B. Fowler (1985) Cold hardiness in hexaploid triticale. Canad. J. Plant Sci. 65: 487-490.

Crossway, A. and  J. Dvorak (1984) Distribution of nostructural variation along three chromosome arms between wheat cultivars Chinese Spring and Cheyenne. Genetics 106: 309-324.

Chen, K. C. and  J. Dvorak (1984) The inheritance of genetic variation in Triticum speltoides affecting heterogenetic chromosome pairing in hybrids with Triticum aestivum. Can. J. Genet. Cytol 26: 279-287.

Dvorak, J., Chen, K.-C. and B. Giorgi (1984) The C-band pattern of a Ph- mutant of durum wheat. Can. J. Genet. Cytol. 26: 360-363.

Dvorak, J., Lassner, M. W., Kota, R. S. and K.C. Chen (1984) The distribution of the ribosomal RNA genes in the Triticum speltoides and Elytrigia elongata genomes. Can. J. Genet. Cytol. 26: 628-632.

Dvorak, J., McGuire, P. E. and S. Mendlinger (1984) Inferred chromosome morphology of the ancestral genome of Triticum. Plant Syst.  Evol. 144: 209-220.

Dvorak, J. and K.-C. Chen (1984) Distribution of nonstructural variation between wheat cultivars along chromosome arm 6Bp: Evidence from the linkage map and physical map of the arm. Genetics 106: 325-333.

Dvorak, J. and K.C. Chen, (1984) Phylogenetic relationships between chromosomes of wheat and chromosome 2E of Elytrigia elongata. Can. J. Genet. Cytol. 26: 128-132.

Dvorak, J. (1983) The origin of wheat chromosomes 4A and 4B and their genome reallocation. Can. J. Genet. Cytol. 25: 210-214.

Dvorak, J. (1983) Evidence of genetic suppression of heterogenetic chromosome pairing in polyploid species of Solanum, sect. Petota. Can. J. Genet. Cytol. 25: 530-539.

McGuire, P. E. and  J. Dvorak (1982) Genetic regulation of heterogenetic chromosome pairing in polyploid species of the genus Triticum sensu lato. Can. J. Genet. Cytol. 24: 57-82.

Appels, R. and  J. Dvorak (1982) The wheat ribosomal DNA spacer: its structure and variation in populations and among species. Theor. Appl. Genet. 63: 337-348.

Appels, R. and  J. Dvorak (1982) Relative rates of divergence of spacer and gene sequences within the rDNA region of species in the Triticeae: implications for the maintanance of homogeneity of a repeated gene family. Theor. Appl. Genet. 63: 361-365.

Dvorak, J. and R. Appels  (1982) Chromosomal and nucleotide sequence differentiation in genomes of polyploid Triticum species. Theor. Appl. Genet. 63: 349-360.

Jan, C.-C., Dvorak, J., Qualset, C. O. and K. M. Soliman (1981) Selection and identification of a spontaneous alien chromosome translocation in wheat. Genetics 98: 389-398.

McGuire, P. E. and  J. Dvorak (1981) High salt tolerance potential in wheatgrasses. Crop Sci. 21: 702-705.

Dvorak, J. (1981) Genome relationships among Elytrigia (=Agropyron) elongata, E. stipifolia, "E. elongata 4x," E. caespitosa, E. intermedia, and "E. elongata 10x. Can. J. Genet. Cytol. 23: 481-492.

Dvorak, J. and P.E. McGuire (1981) Nonstructural chromosome differentiation among wheat cultivars with special reference to differentiation of chromosomes in related species. Genetics 97: 391-414.

Dvorak, J. (1981) Chromosome differentiation in polyploid species of Elytrigia, with special reference to the evolution of diploid-like chromosome pairing in polyploid species. Can. J. Genet. Cytol. 23: 287-303.

Dvorak, J. and D.R. Knott (1980) Chromosomal location of two leaf rust resistance genes transferred from Triticum speltoides to T. aestivum. Can. J. Genet. Cytol. 22: 381-389.

Dvorak, J. (1980) Homoeology between Agropyron elongatum chromosomes and Triticum aestivum chromosomes. Can. J. Genet. Cytol. 22: 237-259.

Geng, S., Dvorak, J. and P. Scheeman (1979) A probability model for evaluating the randomness of the assortment of chromosomes during somatic reduction. Genetics 91: 565-573.

Dvorak, J. (1979) Metaphase I pairing frequencies of individual Agropyron elongatum chromosome arms with Triticum chromosomes. Can. J. Genet. Cytol. 21: 243-254.

Dvorak, J. and D.B. Fowler (1978) Cold hardiness potential of triticale and tetraploid rye. Crop Sci. 17: 477-478.

Fowler, D. B., Dvorak, J. and L.V. Gusta (1977) A comparison of the cold hardiness of several Triticum species and Secale cereale. Crop Sci. 17: 941-943.

Knott, D. R., Dvorak, J. and Nanda, J. S. (1977) The transfer to wheat and homoeology of an Agropyron elongatum chromosome carrying resistance to stem rust. Can. J. Genet. Cytol. 19: 75-79.

Dvorak, J. (1977) Transfer of leaf rust resistance from Aegilops speltoides to Triticum aestivum. Can. J. Genet. Cytol. 19: 133-141.

Dvorak, J. (1977) Effect of rye on homoeologous chromosome pairing in wheat x rye hybrids. Can. J. Genet. Cytol. 19: 549-556.

Knott, D. R. and  J. Dvorak (1976). Alien germ plasm as a source of resistance to disease. Annual Review of Phytopathology.  K. F. Baker, G. A. Zentmyer and E. B. Cowling (Eds). 14: 211-235.

Dvorak, J. (1976) The relationship between the genome of Triticum urartu and the A and B genomes of T. aestivum. Can. J. Genet. Cytol. 18: 371-377.

Dvorak, J. (1975) Meiotic pairing between single chromosomes of diploid Agropyron elongatum and decaploid A. elongatum in Triticum aestivum. Can. J.  Genet. Cytol. 17: 329-336.

Dvorak, J., Harvey, B. L. and Coulman, B. E. (1973) The use of nitrous oxide for producing eupolyploids and aneuploids in wheat and barley. Can. J. Genet. Cytol. 15: 205-214.

Dvorak, J. and D.R. Knott (1973) A study of somatic association of wheat chromosomes. Can. J. Genet. Cytol. 15: 411-416.

Dvorak, J. (1973) Production of aneuploids in Avena sativa with nitrous oxide. Can. J. Genet. Cytol. 15: 649-651.

Dvorak, J. (1972) Genetic variability in Aegilops speltoides affecting homoeologous pairing in wheat. Can. J. Genet. Cytol. 14: 371-380.

Patents

Halverson, J.L.,  J. Dvorak, T. Stevenson (1999) Microsatellite sequences for canine genotyping. United States Patent Application. Patten no. 5,874,217.

Abstracts

Dvorak, J. (2003) Recombination between homoeologous chromosomes in the wheat genetic background. Plant and Animal Genome XI. p. 57.

You, F. M.C. Luo, G.R. Lazo, O.D. Andeerson, P.E. McGuire,  J. Dvorak (2003) Database and data manipulation for the wheat D genome physical mapping project. Plant and Animal Genome XI. p. 292.

Anderson, O. D., J. A. Anderson, T.J. Close, J. Dubcovsky,   J. Dvorak, B.S. Gill, K.S. Gill, J. P. Gustafson , S. F. Kianian, N. L.V. Lapitan,  H. T. Nguyen, M. E. Sorrells, C.M. Steber, P. E. McGuire, and C. O. Qualset (2003) Bin-mapping in wheat: Towards physical map of wheat using ESTs and deletion stocks. Plant and Animal Genome XI. p. 84.

Dvorak, J., O.D. Anderson, B.S. Gill, M.C. Luo, H.B. Zhang, K.R. Deal, W.L. Li, F.M. You, Y.Q. Gu, P.E. McGuire (2003) Assessment of the Insular Organization of the Wheat D Genome by Physical Mapping. Plant and Animal Genome XI. p. 163.

Akhunov, E.D., L.L. Qi, B. Echalier, B.S. Gill, G.R. Lazo, S. Chao, O.D. Anderson, P.E. McGuire, C.O. Qualset, and  J. Dvorak (2003) The organization and rate of evolution of the wheat transcriptome are correlated with recombination rates along chromosome arms.  Plant and Animal Genome XI. p. 163.

Li, W.L., K.R. Deal, V. Kuraparthy, Y.G. Yu,  J. Dvorak, B.S. Gill (2003) Anchoring Aegilops tauschii BAC contigs to genetic maps with RFLP and EST markers. Plant and Animal Genome XI. p. 105.

Luo, M.C., C. Thomas, F. M. You, J. Hsiao, S. Ouyang, C. R. Buell, M. Malandro, P. E. McGuire, O. D. Anderson, and  J. Dvorak (2003) BAC fingerprinting methodology utilizing the SNaPshotTM  labeling kit and sizing of restriction fragments by capillary electrophoresis. Plant and Animal Genome XI. p. 104.

Peng, J. H. Zadeh, L. Qi,, B. Echalier, B.S. Gill, S. Chao, G. Lazo, O. D. Anderson, E. D. Akhunov,  J. Dvorak, A. M. Linkiewicz, J. Dubcovsky, C.E. Bermudez-Kandianis, R.A. Green, M. La Rota,  M. E. Sorrells, M. Dilbirligi, D. Sidhu, M. Eryman, K. S. Gill, Miftahudin, X. Ma, A. Mahmoud, J. P. Gustafson, E.J. Wennerlind, V. Nduati, J.L. Gonzalez-Hernandez, J. A. Anderson, J. Peng, K. Hossain, V. Kalavacharla, S. F. Kianian, M.S. Pathan, H. T. Nguyen, T.J. Close, P. E. McGuire, C. O. Qualset, N. L.V. Lapitan (2003) Deletion mapping of expressed sequence tags and functional genomics in the group 1 chromosomes of wheat, Triticum aestivum. Plant and Animal Genome XI. p. 164.

Xu, Z., K.R. Deal, W.L. Li, L. Covaleda, Y.L. Cheng,  J. Dvorak, M.C. Luo, B.S. Gill, O.D. Anderson, and H.B. Zhang (2002) Construction and characterization of five large-insert BAC and BIBAC libraries of Aegilops tauschii, the diploid donor of the wheat D genome. Plant and Animal Genome X. p. 101.

Luo, M.C., C. Thomas, Z. Xu, H.B. Zhang, M. Malandro, M. Morgante, P. E. McGuire, and  J. Dvorak (2002) Automated fingerprinting of BAC libraries for the construction of physical maps of large genomes. Plant and Animal Genome X. p. 108.

Dvorak, J., Z.L. Yang, M.C. Luo (1999) Genetic variation, recombination, and divergence across chromosomes.  Plant and Animal Genome VII. p. 186.

Deal K.R., S. Goyal, and  J. Dvorak (1999)  Genetic control of K+/Na+ selectivity in Lophopyrum elongatum. Plant and Animal Genome VII. p. 175.

Luo, M.C., Z.L. Yang,  J. Dvorak (1999) Chromosome manipulation by homoeologous recombination in wheat. Plant and Animal Genome VII. p. 174.

Dvorak, J., M.-C. Luo, Z.-L. Yang (1997) Genetic evidence on the origin of T. aestivum L. in The Origins of Agriculture and the Domestication of Crop Plants in the Near East. Edited by A. Damania, ICARDA, Aleppo, Syria. pp. 23-24.

Luo, M.-C., J. Dubcovsky, and  J. Dvorak (1997) Recognition of chromosome homoeology by the wheat Ph1 locus. Plant and Animal Genome V. p. 95.

Dubcovsky, J. , M. L. Appendino, S. N. Marcucci-Poltri, M.C. Luo, and  J. Dvorak. (1997) Vernalization genes from T. monococcum L.  Plant and Animal Genome V. p. 92.

Dvorak, J.,  Z.-L. Yang, M.-C. Luo. (1997) Positional dependence of genetic variation (RFLP) within Triticum genomes. Plant and Animal Genome V. p. 61.

Gao, M J., Travis, R. L. and Dvorak, J. (1997) Use of 2-D IEF-SDS-PAGE in identification of proteins encoded by genes in the Kna1 region of wheat chromosome 4D, Plant and Animal Genome V. p. 144.

Dvorak, J. (1996) Analysis of breadmaking attributes of wheat flour with recombinant substitution lines. Joined Proc. of the 5th and 6th public Workshops of the International Triticeae Mapping Initiative, Norwich, England and Sydney, Australia. P. E. McGuire and C. O. Qualset (Eds).  Genetic Resources Conservation Program, Division of Agriculture and Natural Resources, University of California, Davis, 180.

Dubcovsky, J. , M. L. Appendino, S. N. Marcucci-Poltri, M.C. Luo, and  J. Dvorak (1996) Vernalization genes from T. monococcum L. Joined Proc. of the 5th and 6th public Workshops of the International Triticeae Mapping Initiative, Norwich, England and Sydney, Australia. P. E. McGuire and C. O. Qualset. (Eds) Genetic Resources Conservation Program, Division of Agriculture and Natural Resources, University of California, Davis, p180.

Dubcovsky, J. , M.C. Luo, G.-Y. Zhong, and  J. Dvorak (1995) Comparative RFLP map of Triticum monococcum L.:  Structural and nonstructural variataion. Public Workshops of the International Triticeae Mapping Initiative,  Nowrich, U.K., Genetic Resources Conservation Program, Division of Agriculture and Natural Resources, University of California, Davis, p. 145.

Dvorak J., J. Dubcovsky, M. C. Luo, and G. Y. Zhong (1995) Chromosome differentiation and it recognition by the Ph1 gene in wheat. 50th SEB Meeting, Cambridge, U.K. p. 24.

Dubcovsky, J. and  J. Dvorak (1995) Nomadic multigene loci and chromosome colinearity.  50th SEB Meeting, Cambridge, U.K. p. 24.

Roussett, M. R. S. Kota, J. Dubcovsky, and  J. Dvorak (1995) Use of recombinant substitution lines for gene mapping and QTL analysis of bread making quality in wheat. Plant Genome III, SanDiengo, p73.

Dubcovsky, J. M. C. Luo, G. Y. Zhong, A. Desai, and  J. Dvorak (1995) Genetic map of Triticum monococcum. Plant Genome III, San Diego, p. 60.

Zhong, G.-Y. and  J. Dvorak (1995) Genetic regulation of the accumulation of the early-salt-stress-induced genes (ESI) mRNAs of Lophopyrum elongatum genes investigated with L. elongatum -T. aestivum disomic addition lines.  Plan Genome III, San Diego, p. 93.

Van Deynze, A.E., J. Dubcovsky,  K.S. Gill,  J.C. Nelson, M.E. Sorrells,  J. Dvorak, B.S. Gill, E.S. Lagudah, S.R. McCouch, and R. Appels (1995) Molecular-genetic maps for group 1 chromosomes of Triticeae species and their relation to chromosomes in rice and oat. Plant Genome III, San Diego, p. 34.

Deal, K. J. Dubcovsky, and  J. Dvorak (1995) The mapping of the wheat K+/ Na+ discrimianator locus, Kna1, and the subsequent construction of molecular markers fir its selection in segregating populations. Plant Genome III, San Diego, p. 33.

Dubcovsky, J. and  J. Dvorak (1994) Homoeologoua recombination between RFLP markers in wheat chromosome 1A in the presence and absence of the Ph1 locus. Plant genome II, San Diego, p. 27

Zhong, G.-Y. and  J. Dvorak (1994) Genetic basis of higher expression of early-salt-stress-induced genes in salt-stressed Lophopyrum elongatum than in wheat. 5th International Symposium of Genetics and Molecular Biology of Plant Nutrition, July 17 - 24, 1994, Davis, California,  p. 139.

Dvorak, J. (1994) The genetics and physiology of mineral stress tolerance investigated by chromosome manipulation.  The 5th International Symposium of Genetics and Molecular Biology of Plant Nutrition, July 17 - 24, 1994, Davis, California,  p. 14.

Colmer, T.D., E. Epstein, and  J. Dvorak (1994) The NaCl tolerance of a wheat x Lophopyrum elongatum amphiploid is associated with Na exclusion, and high K/Na ratio and glycinebetaine accumulation in young leaf blades. The 5th International Symposium of Genetics and Molecular Biology of Plant Nutrition, July 17 - 24, 1994, Davis, California.  p.43

Dvorak, J., J.  Dubcovsky, and H.-B. Zhang (1993) The use of variation in repeated nucleotide sequences in genome analysis.  XVII Int. Congress of Genetics.

Dvorak, J. (1993) Enhancement of salt stress tolerance in wheat by alien germplasm. VIII International Wheat Genetics Symposium, Beijing, P.R. China, p. 243.

Epstein, E., J.A. Omielan,  J. Dvorak, and Z.-Z. Huang (1992) Salt tolerance and physiological correlates in wheat incorporating individual chromosomes of salt-tolerant Lophopyrum elongatum.  Proc. 4th Int. Symp. Genetic Aspects of Plant Nutrition.  Canberra, Australia, p. 34.

Gulick, P. and  J. Dvorak (1990)  Cloning and characterization of salt-stress induced genes in the roots of Lophopyrum elongatum reveals the early response.  In;  Molecular Strategies for Crop Improvement, Keystone.  J. Cell Biochemical.  Suppl.  14E, p. 300.

Anderson, O.D., B. Cassidy, G. Galili,  J. Dvorak, and F.C. Greene (1990) Characterization and modification of genes encoding quality-related wheat proteins of the gluten matrix.  In: Molecular Strategies for Crop Improvement, Keystone.  J. Cell Biochem.  Suppl. 14E, p. 344.

Michael W. Lassner and  J. Dvorak (1985) Organization of the 5SrRNA gene family in wheat.  J. Cellular Biochem., Supplement 9C, p. 219.

Gulick, P. E.  and  J. Dvorak  (1985)  Towards understanding of the molecular basis of salt tolerance in Elytrigia.  J. Cellular Biochem., Supplement 9C, p. 217.

Dvorak, J. and A. Love (1981) The biological species concept and polyploidy in evolutionary taxonomy.  XIII International Botanical Congress, Sydney, Australia, p. 133.

Jan, C. C.,  J. Dvorak, C. O. Qualset, and C. W. Schaller (1979)  Hybridization between Triticum aestivum L. and Hordeum vulgare L.  71st Annual Meeting American Society of Agronomy, p. 64.

McGuire, P. E. and  J. Dvorak (1979)  Genetic control of chromosome pairing in polyploid species of Triticinae.  Genetics 91:s79.

Dvorak, J. and P. E. McGuire (1979)  Reduction in metaphase I chromosome pairing in Triticum aestivum due to chromosome heterozygosity.  Genetics 9:29.

Dvorak, J. E. Scheltgen, and D. R. Knott. (1972) Chromosomal and molecular differentiation of genomes in Triticinae.  Canad. J. Genet. Cytol. 14:725.

Dvorak, J. 1992 Homoelogous relationships between chromosomes of Agropyron elongatum (Host) P.B. (2n = 14) and those of Triticum aestivum L.  Summary of the dissertation for degree of Doctor of Philosophy, University of Saskatchewan.

Dvorak, J. (1971) A study of homoeology between the chromosomes of diploid Agropyron elongatum Host. and wheat, Triticum aestivum L. (1971) Canad. J. Genet. Cytol. 13:630.