fastU

fastU performs a number of minor fasta-handling utilities

Documentation:

Required command line parameters:

-I 'filename' : input name of fasta file(s) (accepts * wildcard).

Optional command line parameters:

-V : for verbose output
-N : turn end gaps into N's
-M : turn all characters except A,C,G,T,_ into N's
-O : outputs to file 'filename'.out instead of stdout
-C : changelog since version 1.0
-S : splits alignment into separate files for groups of sequence ID's
-G : replaces Genbank ID's with species name (requires Bioperl installation)

Download: fastU.pl