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Journal Club - Spring '06

 

  4/6 4/13 4/20 4/27 5/4 5/11 5/18 5/25
  paper order paper order paper order paper order paper order paper order paper order paper order
John 29 6 41 6 50 4 48 3 32 2 NO MEETING 7 1 19 5
Shari 12 4 14 3 18 2 5 1 45 7 56 5    
Nikolai 10 2 23 1 35 6 37 5 43 5 46 3 44 2
Resmi 6 1 15 7 20 5 2 4 16 4 53 2 55 1
Lanxin     27 5           3        
Rebecca 25 5 49 4 30 3 26 2 40 1 31 6 1 4
Shih-chi 21 3 11 2 42 1 38 6 51 6 47 4 64 3

 

  1. Aharoni A, Giri AP, Verstappen FW, Bertea CM, Sevenier R, Sun Z, Jongsma MA, Schwab W, Bouwmeester HJ (2004) Gain and loss of fruit flavor compounds produced by wild and cultivated strawberry species. Plant Cell 16:3110-31131 
  2. Aluru MR, Yu F, Fu A, Rodermel S (2006) Arabidopsis variegation mutants: new insights into chloroplast biogenesis. J Exp Bot, in press. Resmi 4/27
  3. Auldridge ME, Block A, Vogel JT, Dabney-Smith C, Mila I, Bouzayen M, Magallanes-Lundback M, Dellapenna D, McCarty DR, Klee HJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates the divergent roles of this multifunctional enzyme family. Plant J 45:982-993
  4. Baker DJ, Jeganathan KB, Malureanu L, Perez-Terzic C, Terzic A, van Deursen JM (2006) Early aging-associated phenotypes in Bub3/Rae1 haploinsufficient mice. J Cell Biol 172:529-540
  5. Barbrook AC, Howe CJ, Purton S (2006) Why are plastid genomes retained in non-photosynthetic organisms? Trends Plant Sci 11:101-108 Shari 4/27
  6. Bard F, Casano L, Mallabiabarrena A, Wallace E, Saito K, Kitayama H, Guizzunti G, Hu Y, Wendler F, Dasgupta R, Perrimon N, Malhotra V (2006) Functional genomics reveals genes involved in protein secretion and Golgi organization. Nature 439:604-607 Resmi 4/6
  7. Bloois EV, Haan GJ, Gier JW, Oudega B, Luirink J (2006) Distinct requirements for translocation of the N-tail and C-tail of the Escherichia coli inner membrane protein CYOA. J Biol Chem, 10002-10009
  8. Bond PJ, Sansom MS (2006) Insertion and assembly of membrane proteins via simulation. J Am Chem Soc, in press.
  9. Contreras Martinez LM, Martinez-Veracoechea FJ, Pohkarel P, Stroock AD, Escobedo FA, Delisa MP. (2006) Protein translocation through a tunnel induces changes in folding kinetics: A lattice model study. Biotechnol Bioeng, in press.
  10. Danielsson R, Suorsa M, Paakkarinen V, Albertsson PA, Styring S, Aro EM, Mamedov F (2006) Dimeric and monomeric organization of photosystem II: Distribution of five distinct complexes in the different domains of the thylakoid membrane. J Biol Chem, in press.
  11. Delacour D, Cramm-Behrens CI, Drobecq H, Le Bivic A, Naim HY, Jacob R (2006) Requirement for galectin-3 in apical protein sorting. Curr Biol 16:408-14
  12. Demidov VV, Dokholyan NV, Witte-Hoffmann C, Chalasani P, Yiu HW, Ding F, Yu Y, Cantor CR, Broude NE (2006) Fast complementation of split fluorescent protein triggered by DNA hybridization. Proc Natl Acad Sci U S A, in press.
  13. Frazier AE, Taylor RD, Mick DU, Warscheid B, Stoepel N, Meyer HE, Ryan MT, Guiard B, Rehling P (2006) Mdm38 interacts with ribosomes and is a component of the mitochondrial protein export machinery. J Cell Biol 172:553-564
  14. Gros E, Deshayes S, Morris MC, Aldrian-Herrada G, Depollier J, Heitz F, Divita G. (2006) A non-covalent peptide-based strategy for protein and peptide nucleic acid transduction. Biochim Biophys Acta, in press.
  15. Haswell ES, Meyerowitz EM (2006) MscS-like proteins control plastid size and shape in Arabidopsis thaliana. Curr Biol 16:1-11     
  16. Hessa T, Kim H, Bihlmaier K, Lundin C, Boekel J, Andersson H, Nilsson I, White SH, von Heijne G (2005) Recognition of transmembrane helices by the endoplasmic reticulum translocon, Nature 433:377–381
  17. Josyula R, Jin Z, McCombs D, Delucas L, Sha B (2006) Preliminary crystallographic studies of yeast mitochondrial peripheral membrane protein Tim44p. Acta Crystallograph Sect F Struct Biol Cryst Commun 62:172-174
  18. Kappers IF, Aharoni A, van Herpen TW, Luckerhoff LL, Dicke M, Bouwmeester HJ (2005) Genetic engineering of terpenoid metabolism attracts bodyguards to Arabidopsis. Science 309:2070-2072
  19. Karniely S, Regev-Rudzki N, Pines O (2006) The presequence of fumarase is exposed to the cytosol during import into mitochondria. J Mol Biol 358:396-405
  20. Kessler F, Schnell DJ (2006) The function and diversity of plastid protein import pathways: a multilane gtpase highway into plastids. Traffic 7:248-57
  21. Kikuchi S, Hirohashi T, Nakai M (2006) Characterization of the preprotein translocon at the outer envelope membrane of chloroplasts by blue native PAGE. Plant Cell Physiol, in press.
  22. Kota P, Reeves PJ, Rajbhandary UL, Khorana HG (2006) Opsin is present as dimers in COS1 cells: identification of amino acids at the dimeric interface. Proc Natl Acad Sci U S A 103:3054-3059
  23. Krantz BA, Finkelstein A, Collier RJ (2006) Protein translocation through the anthrax toxin transmembrane pore is driven by a proton gradient. J Mol Biol 355:968-979
  24. Kurien BT, Scofield RH (2006) Western blotting. Methods, in press.
  25. Lorenz H, Hailey DW, Lippincott-Schwartz J (2006) Fluorescence protease protection of GFP chimeras to reveal protein topology and subcellular localization. Nat Methods 3:205-210
  26. Mackenzie JA, Payne RM (2006) Preparation of ribosomes loaded with truncated nascent proteins to study ribosome binding to mammalian mitochondria. Mitochondrion, in press. Rebecca 4/27
  27. Matsuo T, Onai K, Okamoto K, Minagawa J, Ishiura M (2006) Real-time monitoring of chloroplast gene expression by a luciferase reporter: evidence for nuclear regulation of chloroplast circadian period. Mol Cell Biol 26:863-870
  28. Minai L, Wostrikoff K, Wollman FA, Choquet Y (2006) Chloroplast biogenesis of photosystem II cores involves a series of assembly-controlled steps that regulate translation. Plant Cell 18:159-175   
  29. Murcha MW, Elhafez D, Millar AH, Whelan J (2005) The C-terminal region of TIM17 links the outer and inner mitochondrial membranes in Arabidopsis and is essential for protein import. J Biol Chem 280:16476-16483
  30. Perry AJ, Hulett JM, Likic VA, Lithgow T, Gooley PR (2006) Convergent evolution of receptors for protein import into mitochondria. Curr Biol 16:221-229     
  31. Pesaresi P, Masiero S, Eubel H, Braun HP, Bhushan S, Glaser E, Salamini F, Leister D (2006) Nuclear photosynthetic gene expression is synergistically modulated by rates of protein synthesis in chloroplasts and mitochondria. Plant Cell 18:970-991
  32. Reinbothe C, Bartsch S, Eggink LL, Hoober JK, Brusslan J, Andrade-Paz R, Monnet J, Reinbothe S. (2006) A role for chlorophyllide a oxygenase in the regulated import and stabilization of light-harvesting chlorophyll a/b proteins. Proc Natl Acad Sci U S A103:4777-4782
  33. Reumann S, Inoue K, Keegstra K (2005) Evolution of the general protein import pathway of plastids. Mol Membr Biol 22:73-86
  34. Rubio V, Shen Y, Saijo Y, Liu Y, Gusmaroli G, Dinesh-Kumar SP, Deng XW (2005) An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation. Plant J 41:767-778
  35. Runke G, Maier E, Summers WA, Bay DC, Benz R, Court DA (2006) Deletion variants of Neurospora mitochondrial porin: Electrophysiological and spectroscopic analysis. Biophys J, in press.
  36. Sato T, Esaki M, Fernandez JM, Endo T (2005) Comparison of the protein-unfolding pathways between mitochondrial protein import and atomic-force microscopy measurements. Proc Natl Acad Sci U S A 102:17999-8004
  37. Schnaufer A, Clark-Walker GD, Steinberg AG, Stuart K (2005) The F1-ATP synthase complex in bloodstream stage trypanosomes has an unusual and essential function. EMBO J 24:4029-4040 Nikolai 4/27
  38. Spees JL, Olson SD, Whitney MJ, Prockop DJ (2006) Mitochondrial transfer between cells can rescue aerobic respiration. Proc Natl Acad Sci U S A 103:1283-1288 Shih-chi 4/27
  39. Takahashi H, Iwai M, Takahashi Y, Minagawa J (2006) Identification of the mobile light-harvesting complex II polypeptides for state transitions in Chlamydomonas reinhardtii. Proc Natl Acad Sci U S A 103:477-482
  40. Takahashi S, Murata N (2006) Glycerate-3-phosphate, produced by CO(2) fixation in the Calvin cycle, is critical for the synthesis of the D1 protein of photosystem II. Biochim Biophys Acta, in press.
  41. Thomas JR, Bolhuis A (2006) 'The tatC gene cluster is essential for viability in halophilic archaea.' FEMS Microbiol Lett 256:44-49
  42. Voeltz GK, Prinz WA, Shibata Y, Rist JM, Rapoport TA (2006) A class of membrane proteins shaping the tubular endoplasmic reticulum. Cell 124:573-586
  43. Webb CT, Gorman MA, Lazarou M, Ryan MT, Gulbis JM (2006) Crystal structure of the mitochondrial chaperone TIM9•10 reveals a six-bladed alpha-propeller. Mol Cell 21:123-133 
  44. Wu Y, McCombs D, Nagy L, Delucas L, Sha B (2006) Preliminary X-ray crystallographic studies of yeast mitochondrial protein Tom70p. Acta Crystallograph Sect F Struct Biol Cryst Commun. 62:265-267
  45. Yamamoto A, Cremona ML, Rothman JE  (2006) Autophagy-mediated clearance of huntingtin aggregates triggered by the insulin-signaling pathway. J Cell Biol 172:719-731
  46. Yang S, Lopez CR, Zechiedrich EL (2006) Quorum sensing and multidrug transporters in Escherichia coli. Proc Natl Acad Sci U S A 103:2386-2391
  47. Ytterberg AJ, Peltier JB, van Wijk KJ (2006) 'Protein profiling of plastoglobules in chloroplasts and chromoplasts; a surprising site for differential accumulation of metabolic enzymes.' Plant Physiol 140:984-997
  48. Yu H, Xu X, Britt RD(2006) The 33 kDa Protein Can Be Removed without Affecting the Association of the 23 and 17 kDa Proteins with the Luminal Side of PS II of Spinach. Biochemistry 45:3404-3411 John 4/27
  49. Zahedi RP, Sickmann A, Boehm AM, Winkler C, Zufall N, Schonfisch B, Guiard B, Pfanner N, Meisinger C (2006) Proteomic analysis of the yeast mitochondrial outer membrane reveals accumulation of a subclass of preproteins. Mol Biol Cell 17:1436-1450
  50. Zygadlo A, Robinson C, Scheller HV, Mant A, Jensen PE (2006) 'The properties of the positively charged loop region in Psi-G are essential for its "spontaneous" Insertion into thylakoids and rapid assembly into the photosystem I complex.' J Biol Chem, in press.
  1. Burri L, Vascotto K, Gentle IE, Chan NC, Beilharz T, Stapleton DI, Ramage L, Lithgow T (2006) Integral membrane proteins in the mitochondrial outer membrane of Saccharomyces cerevisiae. FEBS J 273:1507-1515
  2. Chan NC, Likic VA, Waller RF, Mulhern TD, Lithgow T (2006) The C-terminal TPR domain of Tom70 defines a family of mitochondrial protein import receptors found only in animals and fungi. J Mol Biol, in press 
  3. De Los Rios P, Ben-Zvi A, Slutsky O, Azem A, Goloubinoff P (2006) Hsp70 chaperones accelerate protein translocation and the unfolding of stable protein aggregates by entropic pulling. Proc Natl Acad Sci U S A, 6166-6171
  4. Gabaldon T, Snel B, van Zimmeren F, Hemrika W, Tabak H, Huynen MA. (2006) Origin and evolution of the peroxisomal proteome. Biol Direct 1(1):8
  5. Huang J, Taylor JP, Chen JG, Uhrig JF, Schnell DJ, Nakagawa T, Korth KL, Jones AM (2006) The plastid protein thylakoid formation1 and the plasma membrane G-protein GPA1 interact in a novel sugar-signaling mechanism in Arabidopsis. Plant Cell 18:1226-1238
  6. Porras P, Padilla CA, Krayl M, Voos W, Barcena JA (2006) One single in frame AUG codon is responsible for a diversity of subcellular localizations of Glutaredoxin 2 in Saccharomyces cerevisiae. J Biol Chem, in press.
  7. Sanjuan Szklarz LK, Guiard B, Rissler M, Wiedemann N, Kozjak V, van der Laan M, Lohaus C, Marcus K, Meyer HE, Chacinska A, Pfanner N, Meisinger C (2005) Inactivation of the mitochondrial heat shock protein zim17 leads to aggregation of matrix hsp70s followed by pleiotropic effects on morphology and protein biogenesis. J Mol Biol 351:206-218
  8. Stefano G, Renna L, Chatre L, Hanton SL, Moreau P, Hawes C, Brandizzi F (2006) In tobacco leaf epidermal cells, the integrity of protein export from the endoplasmic reticulum and of ER export sites depends on active COPI machinery. Plant J 46:95-110
  9. Yamamoto HY (2006) Functional roles of the major chloroplast lipids in the violaxanthin cycle. Planta, in press.
  10. Machida M, Takechi K, Sato H, Chung SJ, Kuroiwa H, Takio S, Seki M, Shinozaki K, Fujita T, Hasebe M, Takano H (2006) Genes for the peptidoglycan synthesis pathway are essential for chloroplast division in moss. Proc Natl Acad Sci U S A, in press.
  11. Gao H, Sage TL, Osteryoung KW (2006) FZL, an FZO-like protein in plants, is a determinant of thylakoid and chloroplast morphology. Proc Natl Acad Sci U S A, in press. 
  12. Kirstein J, Schlothauer T, Dougan DA, Lilie H, Tischendorf G, Mogk A, Bukau B, Turgay K (2006) Adaptor protein controlled oligomerization activates the AAA+ protein ClpC. EMBO J 25:1481-1491
  13. Giepmans BN, Adams SR, Ellisman MH, Tsien RY (2006) The fluorescent toolbox for assessing protein location and function. Science 312:217-224
  14. Surana NK, Buscher AZ, Hardy GG, Grass S, Kehl-Fie T, St Geme JW 3rd (2006) Translocator proteins in the two-partner secretion family have multiple domains. J Biol Chem, in press.